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Новая версия 19.10 базы данных GTRD уже доступна на http://gtrd.biouml.org
Statistics for version 19.10 (version 19.04)
ChIP-seq
Species
ChIP-seq experiments
Transcription factors
ChIP-seq reads
×109
Reads aligned
×109
ChIP-seq peaks
×106
Clusters
×106
Metaclusters
×106
Arabidopsis thaliana
454 (424)
124 (120)
25.3 (24.2)
15.1 (14.4)
4.8 (2.9)
3.8 (2.2)
0.44 (0.38)
Caenorhabditis elegans
1558 (1508)
331 (326)
30.5 (26.6)
21.5 (19.1)
6.2 (3.4)
4.5 (2.4)
0.5 (0.4)
Danio rerio
55 (51)
21 (20)
2.4 (2.1)
1,2 (1.1)
2.2 (2.1)
2.3 (1.9)
0.28 (0.26)
Drosophila melanogaster
2366 (2182)
569 (552)
79.8 (74.4)
56.8 (53.1)
19.3 (10.5)
5.4 (7.4)
0.7 (1.4)
Homo sapiens
13515 (10675)
1339 (1158)
783.0 (616.3)
606.9 (483.3)
1102.3 (818)
703.6 (505.2)
91.7 (60.5)
Mus musculus
10728 (8055)
738 (584)
577.5 (403.4)
381.9 (273.1)
943.7 (699.8)
598.8 (431.6)
80.8 (56.0)
Rattus norvegicus
187 (153)
36 (29)
9.5 (7.5)
6.1 (4.8)
11.0 (9.3)
9.2 (7.6)
1.4 (1.1)
Saccharomyces cerevisiae
1581 (1364)
161 (142)
25.8 (20.3)
19.2 (15.5)
1.62 (0.66)
0.84 (0.3)
0,056 (0.038)
Schizosaccharomyces pombe
226 (222)
57 (55)
3.5 (3.4)
2.6 (2.6)
0.249 (0.11)
0.18 (0.09)
0.014 (0.011)
Total
30670 (24634)
3376 (2986)
1537.3 (1178.3)
1111.3 (867.1)
2091.3 (1546.7)
1328.6 (958.7)
175.9 (120.1)
| Species | ChIP-seq experiments | Transcription factors | ChIP-seq reads ×109 |
Reads aligned ×109 |
ChIP-seq peaks ×106 |
Clusters ×106 |
Metaclusters ×106 |
|---|---|---|---|---|---|---|---|
| Arabidopsis thaliana | 454 (424) | 124 (120) | 25.3 (24.2) | 15.1 (14.4) | 4.8 (2.9) | 3.8 (2.2) | 0.44 (0.38) |
| Caenorhabditis elegans | 1558 (1508) | 331 (326) | 30.5 (26.6) | 21.5 (19.1) | 6.2 (3.4) | 4.5 (2.4) | 0.5 (0.4) |
| Danio rerio | 55 (51) | 21 (20) | 2.4 (2.1) | 1,2 (1.1) | 2.2 (2.1) | 2.3 (1.9) | 0.28 (0.26) |
| Drosophila melanogaster | 2366 (2182) | 569 (552) | 79.8 (74.4) | 56.8 (53.1) | 19.3 (10.5) | 5.4 (7.4) | 0.7 (1.4) |
| Homo sapiens | 13515 (10675) | 1339 (1158) | 783.0 (616.3) | 606.9 (483.3) | 1102.3 (818) | 703.6 (505.2) | 91.7 (60.5) |
| Mus musculus | 10728 (8055) | 738 (584) | 577.5 (403.4) | 381.9 (273.1) | 943.7 (699.8) | 598.8 (431.6) | 80.8 (56.0) |
| Rattus norvegicus | 187 (153) | 36 (29) | 9.5 (7.5) | 6.1 (4.8) | 11.0 (9.3) | 9.2 (7.6) | 1.4 (1.1) |
| Saccharomyces cerevisiae | 1581 (1364) | 161 (142) | 25.8 (20.3) | 19.2 (15.5) | 1.62 (0.66) | 0.84 (0.3) | 0,056 (0.038) |
| Schizosaccharomyces pombe | 226 (222) | 57 (55) | 3.5 (3.4) | 2.6 (2.6) | 0.249 (0.11) | 0.18 (0.09) | 0.014 (0.011) |
| Total | 30670 (24634) | 3376 (2986) | 1537.3 (1178.3) | 1111.3 (867.1) | 2091.3 (1546.7) | 1328.6 (958.7) | 175.9 (120.1) |
DNase-seq (version 18.06)
Species
DNase-seq experiments
DNase I hypersensitive sites (DHSs)
×106
DNase-seq footprints (FDR<0.01)
×106
Homo sapiens
1482 (739)
- macs2: 238.2
- hotspot2: 169.2
- macs2: 25.90
- hotspot2: 25.07
Mus musculus
103 (103)
- macs2: 20.6
- hotspot2: 22.0
- macs2: 4.44
- hotspot2: 4.14
Total
1585 (842)
- macs2: 258.8
- hotspot2: 191.2
- macs2: 30.34
- hotspot2: 29.21
| Species | DNase-seq experiments | DNase I hypersensitive sites (DHSs) ×106 |
DNase-seq footprints (FDR<0.01) ×106 |
|---|---|---|---|
| Homo sapiens | 1482 (739) |
|
|
| Mus musculus | 103 (103) |
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|
| Total | 1585 (842) |
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